dex-net
dex-net copied to clipboard
BerkeleyAutomation
Floating point exception core dumped
@jeffmahler
I executed code to test dexnet installtion on ubuntu 14 and 16 both in CPU machine.
user/catkin_ws/src/dexnet python setup.py test .
floating point exception core dumped. error i got . robo@dex:~/catkin_ws/src/dex-net$ python setup.py test running test running egg_info writing requirements to src/dex_net.egg-info/requires.txt writing src/dex_net.egg-info/PKG-INFO writing top-level names to src/dex_net.egg-info/top_level.txt writing dependency_links to src/dex_net.egg-info/dependency_links.txt reading manifest file 'src/dex_net.egg-info/SOURCES.txt' writing manifest file 'src/dex_net.egg-info/SOURCES.txt' running build_ext WARNING:root:autolab_perception is not installed as a catkin package - ROS msg conversions will not be available for image wrappers /usr/local/lib/python2.7/dist-packages/requests/init.py:83: RequestsDependencyWarning: Old version of cryptography ([1, 2, 3]) may cause slowdown. warnings.warn(warning, RequestsDependencyWarning) WARNING:root:Unable to import pylibfreenect2. Python-only Kinect driver may not work properly. WARNING:root:Failed to import ROS in Kinect2_sensor.py. Kinect will not be able to be used in bridged mode WARNING:root:Unable to import openni2 driver. Python-only Primesense driver may not work properly WARNING:root:Failed to import ROS in ensenso_sensor.py. ROS functionality not available WARNING:root:Failed to import ROS in phoxi_sensor.py. PhoXiSensor functionality unavailable. WARNING:root:Failed to import mayavi WARNING:root:Failed to import mayavi WARNING:root:Failed to import mayavi WARNING:root:Failed to import mayavi WARNING:root:Failed to import mayavi WARNING:root:Failed to import mayavi test_antipodal_grasp_sampler (test.grasping_test.GraspTest) ... ERROR:root:Singular matrix. Probably a bug ERROR:root:Singular matrix. Probably a bug ERROR:root:Singular matrix. Probably a bug ok test_contacts (test.grasping_test.GraspTest) ... ok test_find_contacts (test.grasping_test.GraspTest) ... ok test_force_closure (test.grasping_test.GraspTest) ... ok test_grasp_quality_functions (test.grasping_test.GraspTest) ... /home/robo/catkin_ws/src/dex-net/src/dexnet/grasping/grasp.py:222: RuntimeWarning: invalid value encountered in arccos axis_dist = (2.0 / np.pi) * np.arccos(np.abs(g1.axis.dot(g2.axis))) ok test_init_grasp (test.grasping_test.GraspTest) ... ok test_init_graspable (test.grasping_test.GraspTest) ... ok test_init_gripper (test.grasping_test.GraspTest) ... ok test_min_norm_vector_in_facet (test.grasping_test.GraspTest) ... ok test_wrench_in_positive_span (test.grasping_test.GraspTest) ... ok test_gaussian_uniform_alloc (test.learning_test.LearningTest) ... ok test_thompson_sampling (test.learning_test.LearningTest) ... ok test_uniform_alloc (test.learning_test.LearningTest) ... ok test_illegal_create (test.database_test.Hdf5DatabaseTest) ... ok test_new_database_and_graspable (test.database_test.Hdf5DatabaseTest) ... Input mesh /home/robo/catkin_ws/src/dex-net/data/test/models/bar_clamp.obj output mesh /home/robo/catkin_ws/src/dex-net/.dexnet/bar_clamp_proc.obj Loading Plugins: Current Plugins Dir is: /usr/lib/meshlab/plugins Error in XMLFile: filter_measure.xml - line: -1, column: -1 - Error in XMLFile: filter_mutualinfo.xml - line: -1, column: -1 - Total 227 filtering actions Total 13 io plugins Opening a file with extention obj Mesh bar_clamp.obj loaded has 1428 vn 476 fn No Script to apply. Mesh /home/robo/catkin_ws/src/dex-net/data/test/models/bar_clamp.obj saved as /home/robo/catkin_ws/src/dex-net/.dexnet/bar_clamp_proc.obj (1428 vn 476 fn) Reading data. Warning: 9 lines were ignored since they did not contain faces or vertices. Read in 1428 vertices and 476 faces. Resolution: 0.000716689 with real dimension 0.064502 Center of grid 0 0 0 Bound box size: (-0.0358344 -0.0358344 -0.0358344) to (0.021729 0.02 0.032251) with dimensions 100 100 100. Computing signed distance field. Writing results to: .dexnet/bar_clamp_proc.sdf Processing complete. chmod: changing permissions of '.dexnet/bar_clamp_proc.sdf': Operation not permitted ERROR
====================================================================== ERROR: test_new_database_and_graspable (test.database_test.Hdf5DatabaseTest)
Traceback (most recent call last): File "/home/robo/catkin_ws/src/dex-net/test/database_test.py", line 168, in test_new_database_and_graspable stable_pose) File "/usr/local/lib/python2.7/dist-packages/meshpy/mesh_renderer.py", line 716, in wrapped_images_viewsphere return self.wrapped_images(mesh, vs_disc.object_to_camera_poses(), render_mode, stable_pose=stable_pose, mat_props=mat_props, light_props=light_props) File "/usr/local/lib/python2.7/dist-packages/meshpy/mesh_renderer.py", line 587, in wrapped_images debug=debug) File "/usr/local/lib/python2.7/dist-packages/meshpy/mesh_renderer.py", line 489, in images c, d = meshrender.render_mesh([P], AttributeError: 'module' object has no attribute 'render_mesh'
Ran 15 tests in 146.936s
FAILED (errors=1) Test failed: <unittest.runner.TextTestResult run=15 errors=1 failures=0> error: Test failed: <unittest.runner.TextTestResult run=15 errors=1 failures=0> Floating point exception (core dumped)
I suspect the meshrender binary didn't install properly. Let's see if you can find the binary
Open a Python terminal and find the location of meshpy
python
>>> import meshpy
>>> print meshpy.__file__
Then look for the file meshrender.so in the directory that is printed from the above statements.
If you do not find it, then your build failed. Change directories to /path/to/meshpy/clone and run the commands in this file from the command line. Paste any errors here.
At first thank you for fast reply. You are right, the problem ist meshrender.so file, it dosn´t exist. I tried to run the comands like you sad, but i get instant an error if i run cmake ...
Output in the command line:
-- The C compiler identification is GNU 4.8.4
-- The CXX compiler identification is GNU 4.8.4
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Found PythonInterp: /usr/bin/python (found version "2.7.6")
-- Found PythonLibs: /usr/lib/i386-linux-gnu/libpython2.7.so (found suitable version "2.7.6", minimum required is "2.7")
-- Looking for XOpenDisplay in /usr/lib/i386-linux-gnu/libX11.so;/usr/lib/i386-linux-gnu/libXext.so
-- Looking for XOpenDisplay in /usr/lib/i386-linux-gnu/libX11.so;/usr/lib/i386-linux-gnu/libXext.so - found
-- Looking for gethostbyname
-- Looking for gethostbyname - found
-- Looking for connect
-- Looking for connect - found
-- Looking for remove
-- Looking for remove - found
-- Looking for shmat
-- Looking for shmat - found
-- Looking for IceConnectionNumber in ICE
-- Looking for IceConnectionNumber in ICE - found
-- Found X11: /usr/lib/i386-linux-gnu/libX11.so
-- Found OpenGL: /usr/lib/i386-linux-gnu/libGL.so
-- Found GLUT: /usr/lib/i386-linux-gnu/libglut.so
-- Boost version: 1.54.0
-- Found the following Boost libraries:
-- python
CMake Error: The following variables are used in this project, but they are set to NOTFOUND.
Please set them or make sure they are set and tested correctly in the CMake files:
GLUT_Xi_LIBRARY (ADVANCED)
linked by target "meshrender" in directory /dex-net/deps/meshpy/meshpy
GLUT_Xmu_LIBRARY (ADVANCED)
linked by target "meshrender" in directory /dex-net/deps/meshpy/meshpy
-- Configuring incomplete, errors occurred! See also "/dex-net/deps/meshpy/build/CMakeFiles/CMakeOutput.log".
Great, we are starting to make some progress. Looks like you are missing some necessary GL libraries.
This link suggests the following command:
sudo apt-get install libxmu-dev libxi-dev
@maxixb Can you run this command and try to compile again? Let me know if you have any errors.
Great, it worked! Thank you! But now I have trouble with the comand make...
I get this output...
/usr/bin/cmake -H/dex-net/deps/meshpy -B/dex-net/deps/meshpy/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /dex-net/deps/meshpy/build/CMakeFiles /dex-net/deps/meshpy/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Verzeichnis »/dex-net/deps/meshpy/build« wird betreten make -f meshpy/CMakeFiles/meshrender.dir/build.make meshpy/CMakeFiles/meshrender.dir/depend make[2]: Verzeichnis »/dex-net/deps/meshpy/build« wird betreten cd /dex-net/deps/meshpy/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /dex-net/deps/meshpy /dex-net/deps/meshpy/meshpy /dex-net/deps/meshpy/build /dex-net/deps/meshpy/build/meshpy /dex-net/deps/meshpy/build/meshpy/CMakeFiles/meshrender.dir/DependInfo.cmake --color= make[2]: Verzeichnis »/dex-net/deps/meshpy/build« wird verlassen make -f meshpy/CMakeFiles/meshrender.dir/build.make meshpy/CMakeFiles/meshrender.dir/build make[2]: Verzeichnis »/dex-net/deps/meshpy/build« wird betreten /usr/bin/cmake -E cmake_progress_report /dex-net/deps/meshpy/build/CMakeFiles 1 [100%] Building CXX object meshpy/CMakeFiles/meshrender.dir/meshrender.cpp.o cd /dex-net/deps/meshpy/build/meshpy && /usr/bin/c++ -Dmeshrender_EXPORTS -fPIC -I/usr/include/python2.7 -I/usr/include/i386-linux-gnu/python2.7 -o CMakeFiles/meshrender.dir/meshrender.cpp.o -c /dex-net/deps/meshpy/meshpy/meshrender.cpp /dex-net/deps/meshpy/meshpy/meshrender.cpp: In function ‘boost::python::tuple render_mesh(boost::python::list, unsigned int, unsigned int, boost::python::numeric::array, boost::python::numeric::array, boost::python::numeric::array, boost::python::numeric::array, boost::python::numeric::array, bool, bool)’: /dex-net/deps/meshpy/meshpy/meshrender.cpp:71:100: error: invalid conversion from ‘long int*’ to ‘Py_ssize_t* {aka int*}’ [-fpermissive] bool verts_readbuf_success = !PyObject_AsReadBuffer(verts.ptr(), &verts_raw_buffer, &verts_buflen); ^ In file included from /usr/include/python2.7/Python.h:133:0, from /usr/include/boost/python/detail/wrap_python.hpp:142, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /dex-net/deps/meshpy/meshpy/meshrender.cpp:1: /usr/include/python2.7/abstract.h:501:22: error: initializing argument 3 of ‘int PyObject_AsReadBuffer(PyObject*, const void**, Py_ssize_t*)’ [-fpermissive] PyAPI_FUNC(int) PyObject_AsReadBuffer(PyObject obj, ^ /dex-net/deps/meshpy/meshpy/meshrender.cpp:72:96: error: invalid conversion from ‘long int’ to ‘Py_ssize_t* {aka int*}’ [-fpermissive] bool tris_readbuf_success = !PyObject_AsReadBuffer(tris.ptr(), &tris_raw_buffer, &tris_buflen); ^ In file included from /usr/include/python2.7/Python.h:133:0, from /usr/include/boost/python/detail/wrap_python.hpp:142, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /dex-net/deps/meshpy/meshpy/meshrender.cpp:1: /usr/include/python2.7/abstract.h:501:22: error: initializing argument 3 of ‘int PyObject_AsReadBuffer(PyObject*, const void**, Py_ssize_t*)’ [-fpermissive] PyAPI_FUNC(int) PyObject_AsReadBuffer(PyObject obj, ^ /dex-net/deps/meshpy/meshpy/meshrender.cpp:73:100: error: invalid conversion from ‘long int’ to ‘Py_ssize_t* {aka int*}’ [-fpermissive] bool norms_readbuf_success = !PyObject_AsReadBuffer(norms.ptr(), &norms_raw_buffer, &norms_buflen); ^ In file included from /usr/include/python2.7/Python.h:133:0, from /usr/include/boost/python/detail/wrap_python.hpp:142, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /dex-net/deps/meshpy/meshpy/meshrender.cpp:1: /usr/include/python2.7/abstract.h:501:22: error: initializing argument 3 of ‘int PyObject_AsReadBuffer(PyObject*, const void**, Py_ssize_t*)’ [-fpermissive] PyAPI_FUNC(int) PyObject_AsReadBuffer(PyObject obj, ^ /dex-net/deps/meshpy/meshpy/meshrender.cpp:74:116: error: invalid conversion from ‘long int’ to ‘Py_ssize_t* {aka int*}’ [-fpermissive] bool mat_props_readbuf_success = !PyObject_AsReadBuffer(mat_props.ptr(), &mat_props_raw_buffer, &mat_props_buflen); ^ In file included from /usr/include/python2.7/Python.h:133:0, from /usr/include/boost/python/detail/wrap_python.hpp:142, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /dex-net/deps/meshpy/meshpy/meshrender.cpp:1: /usr/include/python2.7/abstract.h:501:22: error: initializing argument 3 of ‘int PyObject_AsReadBuffer(PyObject*, const void**, Py_ssize_t*)’ [-fpermissive] PyAPI_FUNC(int) PyObject_AsReadBuffer(PyObject obj, ^ /dex-net/deps/meshpy/meshpy/meshrender.cpp:75:124: error: invalid conversion from ‘long int’ to ‘Py_ssize_t* {aka int*}’ [-fpermissive] bool light_props_readbuf_success = !PyObject_AsReadBuffer(light_props.ptr(), &light_props_raw_buffer, &light_props_buflen); ^ In file included from /usr/include/python2.7/Python.h:133:0, from /usr/include/boost/python/detail/wrap_python.hpp:142, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /dex-net/deps/meshpy/meshpy/meshrender.cpp:1: /usr/include/python2.7/abstract.h:501:22: error: initializing argument 3 of ‘int PyObject_AsReadBuffer(PyObject*, const void**, Py_ssize_t*)’ [-fpermissive] PyAPI_FUNC(int) PyObject_AsReadBuffer(PyObject obj, ^ /dex-net/deps/meshpy/meshpy/meshrender.cpp:218:68: error: invalid conversion from ‘long int’ to ‘Py_ssize_t* {aka int*}’ [-fpermissive] &proj_buflen); ^ In file included from /usr/include/python2.7/Python.h:133:0, from /usr/include/boost/python/detail/wrap_python.hpp:142, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /dex-net/deps/meshpy/meshpy/meshrender.cpp:1: /usr/include/python2.7/abstract.h:501:22: error: initializing argument 3 of ‘int PyObject_AsReadBuffer(PyObject*, const void**, Py_ssize_t*)’ [-fpermissive] PyAPI_FUNC(int) PyObject_AsReadBuffer(PyObject obj, ^ /dex-net/deps/meshpy/meshpy/meshrender.cpp: In function ‘boost::python::list mul_array(boost::python::numeric::array, int)’: /dex-net/deps/meshpy/meshpy/meshrender.cpp:365:71: error: invalid conversion from ‘long int’ to ‘Py_ssize_t* {aka int*}’ [-fpermissive] bool isReadBuffer = !PyObject_AsReadBuffer(a.ptr(), &buffer, &bufLen); ^ In file included from /usr/include/python2.7/Python.h:133:0, from /usr/include/boost/python/detail/wrap_python.hpp:142, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /dex-net/deps/meshpy/meshpy/meshrender.cpp:1: /usr/include/python2.7/abstract.h:501:22: error: initializing argument 3 of ‘int PyObject_AsReadBuffer(PyObject*, const void**, Py_ssize_t*)’ [-fpermissive] PyAPI_FUNC(int) PyObject_AsReadBuffer(PyObject *obj, ^ make[2]: *** [meshpy/CMakeFiles/meshrender.dir/meshrender.cpp.o] Fehler 1 make[2]: Verzeichnis »/dex-net/deps/meshpy/build« wird verlassen make[1]: *** [meshpy/CMakeFiles/meshrender.dir/all] Fehler 2 make[1]: Verzeichnis »/dex-net/deps/meshpy/build« wird verlassen make: *** [all] Fehler 2