BenjaminSchwessinger

Issues when pipelining with snakemake

9

Hi, I am having an issue when pipelining multiple samples with snakemake. It appears that funannotate (e.g. clean) uses the current working directory to store temporary files. These get overwritten...

Hi there, I took some of your material to teach into a (not-yet) carpentry style course. Thanks for putting it up it is super useful. The notebook can be found...

lossing p contig sequence

11

Thanks for sharing early access to this exciting new tool. I have been running the pipeline successfully after some tweaking till the quiver.py stage on cluster that runs FALCON_04, Falcon...

### What is the problem? Hi, The setup package for the workshop is broken https://datacarpentry.org/genomics-workshop/setup.html and hence the toy data is not accessible. Can this be fixed? ### Location of...