BenjaminDelisle

GISAID XT recombinant not detected by sc2rf

4

Hi, I've noticed that sc2rf.py (version sc2rf-7427d2f94b69c965362034c2597b643c5dfaa1cf) could not find any recombination for XT samples available on GISAID `python sc2rf.py nextclade.aligned_XT_Gisaid.fasta`. Here are the available aligned sequences. [nextclade.aligned_XT_Gisaid.txt](https://github.com/lenaschimmel/sc2rf/files/8700879/nextclade.aligned_XT_Gisaid.txt) Nextclade: ...