Benjamin Lee

IndexDefect when using searchIndex.search

2

Hi @andreaferretti! I'm trying to use this awesome library for some bioinformatics but am running into a strange error: ```nim import cello let x = "CGGGACTTACTTGTGGTTCCTGTGGTGCACTCCTGACCCTGCCGCTTTGAAAGAAAAAGAAATGAGGCGAAGAAGTCCTTCAGGGATCCCCGGGGAAACCTGGAGGAAGTCCGACGAGATCGCGGCTGGGGCTTAGGACCCCACTCCTGCGAGACAGGAGTAATCCTAAACAGGGTTTTCACCCTTCCTTTAGTTTCCTTCCTCTCCTGGAGAGGTCTTCTGCCCTAGCCCGGTCTTCGAAGCTTCCTTTGGCTACTACCCGGTGGAAACAACTGAAGCTTCAACGCCTTTTTTTCCAATCTTCTTTAGCACCGGGCTAGGGAGTAAGCCCGTGGAACCTTAGTTTTGTTCCCT" # works let index2...

Incorrect handling of quoted list items

5

For example, ```markdown 1. >This is a quote. 2. This is the second line. ``` generates: Regular pandoc handles it as: Hope this issue makes sense. Thanks for the great...

Autoreset doesn't work inside logging

3

I have to use ```Python logging.info(Fore.GREEN + f"Protocol received: {protocol}" + Style.RESET_ALL) ``` because ```Python init(autoreset=True) ... logging.info(Fore.GREEN + f"Protocol received: {protocol}") ``` does not actually auto reset

Reviewer suggestions

8

_PLOS Computational Biology_ requires us to propose four reviewers. Does anyone have suggestions for who would could propose?

Give specific example of relevant metrics? _Originally posted by @SiminaB in https://github.com/Benjamin-Lee/deep-rules/pull/241#r503038318_

Can someone review relevant papers published in the last year?

2

I'm happy to do this myself but would prefer to delegate if at all possible. Looking at the [commit graph](https://github.com/Benjamin-Lee/deep-rules/graphs/contributors?from=2018-09-29&to=2020-06-04&type=c), it seems this project slowed down about a year ago....

I'm surprised that we haven't cited [this paper](https://www.usenix.org/system/files/conference/usenixsecurity14/sec14-paper-fredrikson-privacy.pdf) in Tip 10 yet. ## Abstract We initiate the study of privacy in pharmacogenetics, wherein machine learning models are used to guide...

Close issues that have been addressed

16

If anyone wants to volunteer for this task, it'll definitely help clarify what still needs to be addressed in the manuscript. If no one is able to, I will get...

Don't forget your ML fundamentals/Rules that apply to ML also apply to DL

2

**Have you checked the [list of proposed rules](https://github.com/Benjamin-Lee/deep-rules/issues?q=is%3Aissue+is%3Aopen+label%3Arule) to see if the rule has already been proposed?** - [x] Yes **Feel free to elaborate, rant, and/or ramble.** Maybe we could...

Abstract as much as possible

7

**Have you checked the [list of proposed tips](https://github.com/Benjamin-Lee/deep-rules/issues?q=is%3Aissue+is%3Aopen+label%3Atip) to see if the tip has already been proposed?** - [x] Yes **Did you add yourself as a [contributor](https://github.com/Benjamin-Lee/deep-rules/blob/master/contributors.md) by making a...