Rui Benfeitas
Rui Benfeitas
I am specifying captions as suggested in the docs: In a markdown cell I write down the caption, and edit its medata to show ``` { "ipub": { "caption": "fig:mylabel"...
I'm trying to use `images_gridconcat` to display a few images that I have stored locally. However, once they are displayed in a Jupyter notebook their resolution becomes much worse, probably...
I have defined the path to my own logo as `./path/to/myown-logo.jpg` Upon building the pdf from `Example.ipynb`, I keep getting the error > INFO:pdf-export:latexmk: !pdfTeX error: pdflatex (file ./Example_files/myown-logo.jpg): reading...
Awsome job on this! I am wondering if you see this being used in jupyter md? Thanks a lot in advance!
Following the tutorial [in here](https://github.com/schlaicha/jupyter-publication-scripts/blob/master/tutorial/tutorial.md), found the following issues in [Converting notebook to LaTeX/PDF](https://github.com/schlaicha/jupyter-publication-scripts/blob/master/tutorial/tutorial.md#converting-notebook-to-latexpdf): - Can't find file `pymdpreprocessor.py`. - File `bibprepreprocessor.py` also not found in [the provided link](https://github.com/schlaicha/jupyter-publication-scripts/blob/master/preprocessors/bibpreprocessor.py)
The motivation for using docker, and a short tutorial, need to be added at the start of the course.
THe images in [this notebook](https://github.com/NBISweden/workshop_omics_integration/blob/main/session_meta/Meta_Analyses_Lecture.html) are not rendering correctly, which needs to be fixed. I have now embedded the pdf of this lesson instead of the html, but this still...
- Point to biostats course videos - Point to [Nature points of significance](https://www.nature.com/collections/qghhqm/pointsofsignificance)
Some code chunks ([example](https://github.com/NBISweden/workshop_omics_integration/blob/12ff83d80117cc33e18fcb4c17eae44758707a0f/session_ml/UnsupervisedOMICsIntegration/UnsupervisedOMICsIntegration.Rmd#L21)) still include directions towards conda environments. These need to be removed
- [Benchmarking of module detection methods](https://www.nature.com/articles/s41467-018-03424-4) - [Review of methods for co-expression analysis](https://academic.oup.com/bib/article/19/4/575/2888441)