Benjamin Langmead

icon indicating a website link http://www.langmead-lab.org icon indicating an email [email protected]

icon company Johns Hopkins University icon location Baltimore, MD icon location Associate Professor of Computer Science at Johns Hopkins University

Results 25 comments of Benjamin Langmead

Only one of two paired reads marked "read mapped in proper pair" (flag 2) in FLAG field

Is it possible for you to share the paired-end read that yielded that behavior?

Pre-built indices details

@parkchanhee may know the answer

Missing GTF file path

Could someone in your group comment, @DaehwanKimLab?

Citation

We (@ch4rr0 and I) are working on this. For now, I don't know of a better strategy than just referencing the URL. But we hope to post a short paper...

Split qtip into subcommands

This is a good suggestion. I don't agree with the suggestion of removing the "boilerplate," however. Users will want to option to "just run the whole thing."