readytowear
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BenKaehler
Ready-made Taxonomic Weights Repository
Hello With Greengenes2 replacing Greengenes_13_8, is there an update planned for the weights? Thanks Oliver
Hello, I downloaded ref-seqs.qza using the following command: ``` wget -O "ref-seqs.qza" "https://github.com/BenKaehler/readytowear/blob/master/data/gg_13_8/515f-806r/ref-seqs.qza" ``` Then I tried running it as part of the command: ``` qiime feature-classifier fit-classifier-naive-bayes \ --i-reference-reads...
Hello, I'm Hanbeen Kim. Thank you for being so dedicated. I have a question about "animal-proximal-gut" database. I have studied the rumen microbiome and tried to make a weighted classifier....
Howdy! I noticed the disclaimer on the [GTDB data page](https://github.com/BenKaehler/readytowear/tree/master/data/gtdb_r89): > Warning: files in this directory are experimental. Many of the reference sequences appear to be in mixed orientations, which...
Just noticed that the V4 primers being used in the weight assembly scripts are using the old EMP primers (ex [here](https://github.com/BenKaehler/readytowear/blob/master/scripts/assemble-weights.gtdb.sh#L19)). A few years back these were modified slightly and...
The GTDB release is getting a bit long in the tooth. We’re now two releases out of date.
Would be good if we could automate checking that the weights and uploaded references can be used to build valid classifiers.
PR #8 did not include scripts for generating the human vaginal weights. Those scripts must be added.
the tutorial should cover: 1. how to use the readytowear weights 2. how to contribute new readytowear fashions