Beifang Niu

Sure. We will provide this option soon.

The manuscript is being prepared and we will deliver an uniform cutoff.

Hey! The current tumor only option based on entropy theory is just a PRE-beta release. If you just want to detect MSI status for tumor only specimen, please provide me...

Hey, since many people asked for msisensor2, we are considering how we should provide that to the community.

Please try MSIsensor2 here: http://niulab.scgrid.cn/msisensor2/

The tumor/normal pair model in MSIsensor2 is the same as MSIsensor0.6, but we are using a new tumor only model in MSIsensor2 instead of premature entropy method in MSIsensor0.6. We...

Hi，all locations with enough reads depth ( default : 20 ) will be analyzed. You can simply scan the output distribution file to get these sites.

how did you remove duplicates ? looks like dup ratio is so high.

We suggest : MSI_H: msiscore >= 10%, MSI_L: 3.5% =< msiscore < 10%; MSS: msiscore < 3.5%

We din't normalize the TCGA UCEC data ( msiscore: 3.5% ) in MSIsensor original version. You can test with or without normalization option. We suggest that you choose this option...