Denis C. Bauer comments

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                                            Denis C. Bauer

Built-in support for FDR (False Discovery Rate) calculation

This is linked to #91

Invalid initial heap size:

Please use the new repository https://github.com/aehrc/VariantSpark

Need Detail explanation

Please use the new repository https://github.com/aehrc/VariantSpark

Is this under active development?

Please refer to the new repository at https://github.com/aehrc/VariantSpark

Unable to export EC2 image

Yes that's correct, the requirements have changed. I will look into creating an updated AMI.

picard requires reads to have unique names (http://www.biostars.org/p/59521/) so multimappers need to be removed. Which means resolvepairs (https://github.com/BauerLab/resolvepairs) needs to get an extra option to drop reads rather than give...

SamVar

Workaround: use older version (e.g. samtools/0.1.19) by adjusting the default set of modules used in the samvar_config.txt MODULE_SAMVAR=$MODULE_SAMVAR" samtools/0.1.19"