scClustViz
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Capitalization for embeddings needs fixing
If embedding names are capitalized, getEmb fails.
sce <- SingleCellExperiment(
assays=list(counts=matrix(nrow=10,ncol=10),
logcounts=matrix(nrow=10,ncol=10),
reducedDims=list(PCA=matrix(nrow=10,ncol=10),
TSNE=matrix(nrow=10,ncol=10)
)
seur <- as.Seurat(sce)
getEmb(seur,"TSNE") #fails
getEmb(seur,"tsne") #fails