EnrichmentMapApp
EnrichmentMapApp copied to clipboard
BaderLab
The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.
When you click on "EnrichmentMap - show in pathway commons Functionality" and you don't have expression data (you only have a ranked list for example) then pathway commons just keeps...
Bumps apache-karaf from 4.2.1 to 4.3.6. [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a...
![dependabot[bot] avatar](https://avatars.githubusercontent.com/in/29110?v=4 "dependabot[bot] avatar"){kind=avatar}
Build an EM using cyrest with edb directory and rank file creates an EM where the ranks are messed up. In the supplied session file I have created the EM...
Since David has recently been updated and many people use David as their enrichment of choice need to update it. David results should have the visual style label set to...
Should be option for either known signatures or signature discovery as check box in the interface (on the known signatures should also do the filtereing step on just what is...
add notebook to cytoscape workflow github modify output files to be gsea or generic compliant https://bioconductor.org/packages/release/bioc/html/fgsea.html
Bumps logback-classic from 0.9.29 to 1.2.0. [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a...
Bumps httpclient from 4.5.6 to 4.5.13. [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a...
Bumps [junit](https://github.com/junit-team/junit4) from 4.12 to 4.13.1. Release notes Sourced from junit's releases. JUnit 4.13.1 Please refer to the release notes for details. JUnit 4.13 Please refer to the release notes...
Bumps [junit](https://github.com/junit-team/junit4) from 4.12 to 4.13.1. Release notes Sourced from junit's releases. JUnit 4.13.1 Please refer to the release notes for details. JUnit 4.13 Please refer to the release notes...