Benjamin Cohen

Multiple Errors on Mac Silicon

4

I'm trying to run variant calling on ONT data using my MacBook Pro using Apple Silicon (M2). When using tools such as freebayes and Clair3 I get multiple variants, but...

Medaka not detecting installed tools

8

**Describe the bug** When attempting to run `medaka_consensus` within a script, it is failing due to a failure to detect installed tools (i.e. samtools, bcftools, etc.). minimap2 is found, but...