BGemler

icon location Bioinformatician and data scientist at Battelle Memorial Institute. PhD Student in the Bundschuh lab at The Ohio State University Biophysics program.

Results 3 issues of BGemler

Add Aligned Query Seq/Subject Seq to M8 output?

6 comment

Would it be possible to add an option to --outfmt (for .m8/.m9 output file extensions) for searchp and searchn to return the aligned portions of the query sequence/subject sequence? Thank...

No colors in mLocARNA structure predictions from conda installation

3 comment

Installation: conda install -c bioconda locarna Version: LocARNA 1.9.1 Platform: Ubuntu 22.04 LTS The RNA structures (alirna.ps) produced by mLocARNA do not contain any colors (example below). Any ideas/guidance on...

Snippy not identifying rRNA SNPs (presumably due to conserved region?)

Hello, We are not identifying known SNPs near the 3' end of rRNA in Flavobacterium johnsoniae - we confirmed that the SNPs were present in every sample/relevant read by examining...