Mfannot

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ARRAY reference and Bio::SimpleAlign::column_from_residue_number problems

1

I'm trying to run mfannot on a number of yeast mitochondrial assemblies. Nearly all of them worked perfectly but I am getting two separate errors in two separate assemblies. The...

gettl008

Hello, I've run into an issue in which MFANNOT produces errors on certain sequences during processing of 'hnh'. It seems like something may be wrong with my hmmsearch. During the...

JFWolters

How to generate `.tbl` when running the docker image?

9

I'm running Mfannot via docker image, and it is running ok as far as I can tell. I was wondering how to generate the `.tbl` file, which is provided when...

nathaliagg

ORF prediction with non-standard genetic code sometimes are wrong.

3

I'm using the latest mfannot via docker image. I'm annotating a fungal mt genome with [genetic code 4](https://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi#SG4), and some of the ORFs were problematic. I have cross-validated with ncbi...

cgjosephlee