Avijit-Chowdhury1

update: We also collected PE-polar fieldmap and using that mode of fieldmap correction results in slightly better normalization (although not perfect - cerebellum is out of normalized brain mask): ...

> The reports you provided show that GRE/phasediff fieldmaps were provided. There seems to be a problem in the direction of correction (opposite to what it should do, so enlarging...

@effigies @oesteban Tried using the rc2 unstable release, still getting the same results as rc1: https://www.dropbox.com/sh/t1njjxbh3nw11wa/AADMNM8NDh3uphphl5V-92ama?dl=0 . I think overall phase-difference fieldmap correction is not working. Using PEpolar fieldmap the...

@oesteban @effigies Hi, sure, I have shared data of one subject with phasediff fieldmap here: https://www.dropbox.com/sh/2jzefzhpf0ez0nr/AAB0kp6_tFeJ8fJ4G3_nOTsna?dl=0 Please note that I raised this issue before in #2553 for the same dataset...

@oesteban @effigies Hi, was wondering if you had a chance to look at the data?

@oesteban @effigies Would there be a way to debug this at my end while you are looking at the data?

@oesteban Thanks for your reply. I have tried using the latest code - the results are the same (bad SDC).

@oesteban @effigies Is there a document which specifies the intermediate files in the fmriprep working directory? For example, if I want to run the normalization by myself using FSL, which...

@oesteban @effigies Hi, any update on this? Thanks again

Hi, any updates on this? @oesteban @effigies