Auerilas

I can confirm this behavior on a different dataset. I had to use .reset_index() to plot. I never would've figured this out but for this issue being opened here, so...

As an end user, I think I would prefer option #1 for a variety of reasons. But most of all because pandas calculations so often work on index joins in...

I guess I'm just a kind of person who needs to know when things are potentially incorrect and being told to sort out the issues before they cause problems downstream....

This is better phrased than my reply, but yes, to me a clear error suggests I erred upstream and need to get my cards in order. Usually, if this problem...

I wrote a pure python implementation first, but it was deathly slow compared to C. If you can write a pure python one that's fast, go for it. But I'm...

Yea. I used their isotonic function. And part of the point of EcoPy was that scikit is confusing, especially for ordination. I never could make sense of their nmds or...