Samuel Aroney
Samuel Aroney
## Expected Behavior Completes databases workflow, creating GTDB database. ## Current Behavior Error occurs near the end of the workflow. Files created: ```gtdb gtdb.dbtype gtdb_h gtdb_h.dbtype gtdb_h.index gtdb.index gtdb.source tmp```...
Is there a way to provide gene calls (e.g. gff files) for use in the dN/dS calculation?
Aviary v0.5.3 error in finalize_stats rule. 27/29 steps done, so I guess this is the last job and the other results are fine to use? Simplified command (recovery from long-read...
When clades are collapsed in circular layout, the "triangle" representation is curved. ```r nwk
Is there a way to only run the marker identification and MSA? I do not need the downstream products.
I had a go, but I can't work out this compiler error: ``` Compiling galah v0.3.1 (/mnt/hpccs01/home/aroneys/src/galah) error[E0277]: the trait bound `&&str: Borrow` is not satisfied --> src/skani.rs:83:52 | 83...
It looks like rescue_small rescues small _query_ sketches but not small _reference_ sketches (see https://github.com/bluenote-1577/skani/blob/ec4e2e181519215c4c4a4f0bb9a1c8fdc85ca4e5/src/screen.rs#L159). This is a bug, right? Also, do you have a rough estimate for the number...
Thanks for the fantastic binner! I'm getting many more bins from Semibin than any other binner. Running Semibin within Aviary (https://github.com/rhysnewell/aviary/), I noticed that in the binning phase (logging: `SemiBin[22080]...
Just noticed that the `genome_stats.tsv` is described to have "the required information for the MIMAG requirements". But as far as I can see, it includes a total count of all...