Arnav Bharti
Arnav Bharti
I managed to get the GTF file (instead of converting from GFF). A few lines were like this: `NC_009911.1 RefSeq exon 441005 441169 . - . gene_id "PVX_110843"; transcript_id "XR_003001228.1";...
Even with pool genes flag the output is still empty. `$ suppa.py generateEvents -i ~/Downloads/genomic.gtf -o local -f ioe -e {SE,SS,MX,RI,FL} --pool-genes` ``` INFO:eventGenerator:Reading input data. INFO:eventGenerator:Pooling genes INFO:eventGenerator:Calculating events...
1. Initially FAST5 2. After basecalling, FASTQ 3. Nanopolish index: (input) FAST5, FASTQ; (output) index files .fai, etc. 4. minimap: (input) FASTA, FASTQ; (output) SAM 5. samtools: (input) sam (output)...
Hi, could you tell if you check for these tags via text search or is there a tool. Because there exists 'MM' in the FASTq file upon a simple text...
Hi, 1. I used y flag with minimap2 `minimap2 -aY -x map-ont` and it still gave same error 2. the awk `awk 'NR %4 == 1 && $0 ~ /MM:Z:/'`...
Even with -y same issue
Hi @ArtRand, Output of 5mC gives only `m` modifications. And its result - which nucleotides are differentially methylated on 5mC is what I want. Similarly, I want to know which...
Hi @ArtRand , Is there any updates on this? It would be helpful to have your opinion.
Hi @ArtRand, Can you please give as estimate of the build timeline, I will arrange my targets accordingly.
Hi @ArtRand, Is there any update on the build?