Arnaud Belcour

Hello, ## Technical part While working on the reconstruction of metabolic networks from public genomes of the NCBI database, I have found that gapseq (`version 1.2` with subcommand `doall`) uses...

Delay in file creation with Python implementation in ASP

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Hello, I have an issue while using Clyngor to encapsulate ASP files (which also use python implementation). The python implementation in ASP is used to select some atoms in the...

Non optimal powergraph visualisation

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We have observed in several experiments that the visualisation offered by the powergraph does not reflect exactly the combinatorics of the solution. This seems to be normal as powergrasp uses...

By default m2m_analysis creates powergrasp config file then deletes it. But this will cause issue when launching multiple runs of m2m_analysis at the same time (the same file being manipulated...

To add more details on the metabolic networks used we could compute the deadend and the orphan metabolites for both individual and community. For individual organism we could use [menetools...