Anton Petrov

Currently the following steps are implemented as Django management commands: - [update_karyotypes](https://github.com/RNAcentral/rnacentral-webcode/blob/master/rnacentral/portal/management/commands/update_karyotypes.py) - [update_example_locations](https://github.com/RNAcentral/rnacentral-webcode/blob/master/rnacentral/portal/management/commands/update_example_locations.py) This should run as part of the release process - just like updating the `ensembl_assembly` table.

We need to provide a new way to download text search results in BED/GFF formats. This functionality should be added to the `export` django app and be similar to how...

See CI/CD confluence page for details.

Reimport Modomics data

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At least one species-specific id shows several species at once ([example](http://rnacentral.org/rna/URS00001CE4E0/9606)): The problem happens when the same sequence has the same modifications in multiple species (and the Accession model gets...

Import more HGNC xrefs

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Need to systematically look through all unmapped HGNC xrefs and try to add as many as possible. Examples: * [HGNC:26327](http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=HGNC:26327) refers to NR_026905 (obsolete, not in RNAcentral) but it has...

**Example**: [UniProt bulk download](http://www.uniprot.org/uploadlists/)

[Example ETS](http://rnacentral.org/rna/URS000007769E)

Label sequences that match Pfam domains

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Example: a [possible mRNA](http://rnacentral.org/rna/URS00002CC6BB/90371) (resolvase) matches Pfam PF00589.20.

Examples: LSU, large subunit Y RNA, yrna, y-rna

- [x] update NONCODE links. There appears to be a new URL for some pages: http://www.noncode.org/show_gene.php?id=NONHSAG039629&version=2&utd=1# - [ ] show LNCIPEDIA alternative transcripts. For example, [this gene](https://lncipedia.org/db/gene/lnc-CTD-2228K2.5.1-1) has 6 transcripts...