LJA
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AntonBankevich
Dear developers, I used LJA to assemble a plant genome (~500Mb, het≈1.05%, 2n=30), and after the one day's running, LJA met `Child process crashed` in Uncompressing homopolymers in contigs. Could...
I ran the fasta reads of two HiFi cells (24 and 22 Gb) in LJA in a single AMD EPYC 7351P 16-Core Processor but I got a crash at gap...
Hi, I'm trying to compile LJA, but I'm getting this error: ``` -- The CXX compiler identification is GNU 4.8.5 -- Check for working CXX compiler: /sw/lang/gcc-4.8.5/bin/c++ -- Check for...
Dear Anton There is a contig (`6`) in `mdbg.gfa` that is missing in `assembly.fasta`: ```shell $ grep ">" assembly.fasta >20 >7 >10 >1 >3 >16 >15 ``` Preview of `mdbg.gfa`:...
Hey! Thanks for developing LJA. I've added it to bioconda, it seems to be working fine on Ubuntu. To install it in separate environment and run use commands: 1. `mamba...
Update the `cmake` version limit according to the requirement of `spoa` https://github.com/AntonBankevich/LJA/blob/99f93262c50ff269ee28707f7c3bb77ea00eb576/src/lib/spoa/CMakeLists.txt#L1
Hey I created a Dockerfile and wanted to share it in case it's useful to anyone else: ```dockerfile FROM debian:bullseye MAINTAINER Thomas Roder RUN apt update RUN apt install -y...
Hi, First, thanks for developing LJA! I am trying to run LJA on my HiFi data, using the command: `lja -o lja_defPars --diploid -t 30 --reads hifi.fastq.gz` The program crashes...
Hi there, I would like to report a critical error when running LJA on my HIFI data. The error cropped up around the 48 hr mark, and appears to have...
