Anthony Barente
Anthony Barente
Looks like github recently changed the version of linux that is referred to by `ubuntu-latest`. We need to explicitly set `20.04`.
After install, an error or warning during import seems to occur for some installations: ` ValueError: numpy.ndarray size changed, may indicate binary incompatibility. Expected 96 from C header, got 80...
This PR addresses issue #38, which mentions binary incompatibility. It looks like compilation is occurring with numpy >= 1.23.0. At some point numpy seems to have changed some defaults. As...
Normally, spectra will use 100 m/z bins. However, results on synthetic peptide datasets suggest that narrowing that bin size may help for high res data. This needs to be supported...
Before version 1.0.0, which will be the first version to appear alongside publication, I want to make the following improvements to the repository. 1. **Convert to modern python package design...
I have been having trouble reading mzIdentML files from Comet (v. 2021010). It seems there are some unresolved references in the file that are causing pyteomics' MzIdentML class to read...
Sometimes, if a user specifies an identification file which has more/less scans than the spectrum file, pyAscore will error without an intuitive message. This situation happens if you aggregate all...
After some reading and discussions at ASMS, it seems that it would be really nice to add an FLR calculation to pyAscore. For the user, this would just be another...