AnneBoshove

Thanks for your reply @brentp The coverage should be around 120X as 3 flowcells were used in the sequencing. Unfortunately this is just a random sample so not the worst,...

I managed to look at the data in JBrowse and looked at a few of the SVs with high numbers;   This is the following DUP: DUP | Chr6...

I was having trouble attaching the files here, so i've send them to you in the mail. Maybe good to know that this alignment is done by mapping long reads...

Yes, you should have received it