Anna-Marie Seelen

Incomplete Adapter Trimming with Cutadapt 5.0

3

Hi, First of all, thank you for developing such a useful trimming tool! I'm using Cutadapt 5.0 with Python 3.12.9, installed via conda. I'm running into an issue where not...

refine_dastool is stalling in aviary recover

5

Hi aviary developers, Thanks for developing this great tool. I'm currently running Aviary v0.11.0, which includes Rosella v0.5.4, and I'm encountering an issue with the refine_dastool step. It appears to...

Suggestion to include leftover single reads in recover

2

Hi Aviary developers, We use Aviary a lot in our department, mainly for binning metagenomes. Right now, we handle quality control, trimming, and assembly outside of Aviary, and we usually...

Hi Aviary team, I'm using Aviary 0.11.0 for a hybrid assembly of nanopore reads and short reads. I noticed that some adapter sequences from the raw nanopore reads are still...

Unbinned Contigs fasta file?

1

Dear aviary developers, I was wondering if there is a file in your output that contains all the unbinned contigs from all the binners combined. I couldn’t find one. I...