Ankit Yadav

I've carefully followed the instructions in the main README, including setting up the specified directory structure and ensuring that the "params" file is in place. Despite these efforts, I'm still...

yes, ``` > getwd() [1] "/home/ankit.yadav/readDepth/working_directory" ``` ``` (base) ankit.yadav@icare-pipeline:~/readDepth/working_directory$ la * params annotations: entrypoints.hg19.male gcWinds mapability output: reads: chr1.bed ```

I read the README file for annotation but didn't understand how to create mapabilty and gc content files. like which input should I use? and how can I run those...