AndyLy2Zy

Hi @tjiangHIT, Thanks for your replay. So there is no way to directly obtain the INV sequence from the cuteSV ? One more question, I wonder if the cuteSV can...

Hi @tjiangHIT, Thanks for your friendly reply. I used the **meghit program** to assemble the **Yeast genome** and achieved the **contigs**. After that, I used the **minimap2** to map the...

Hi @tjiangHIT, I added the parameter **_--retain_work_dir_**. The results showed that there have some SVs.  Best, Andy

Hi @tjiangHIT, Although I have added the parameter "--min_support 1" or "-s 1", there is no difference at all. Command: cuteSV final.contigs.sort.bam ~/data/refgenome/sacCer3_ucsc.fa final.contigs.sort.bam2.vcf ./ -p -1 -L -1 --min_support...

Dear Shuqi, I'm so sorry for the later reply. I have sent the assembled genome to you by email. Best, Andy

Hi @tjiangHIT, I note that there are only have the information about the **Number of read support this record** for each SV events in the result VCF file. I wander...