Andreas Heger

Thanks. More info about point 4: pysam depends on the samtools code, which is distributed and compiled alongside pysam. The samtools executable itself is not built. There is no dependency...

Really great work on the logging, and thanks, that would help pysam a lot.

The lines that @jmarshall identified can definitely go, they were used to auto-detect SAM or BAM in early versions of samtools. Will do this before the - very imminent -...