AndreasK

There are some issues with the (original) sintax command that are prohibiting its use for me (and potentially others): -the self testing is very unflexible (can only self test the...

Thanks for your reply. I think it is important to have an output like BLAST ( https://www.drive5.com/usearch/manual/blast6out.html ) , where you have a list of hits. This enables the user...

Thank you for looking into this. I can not possibly imagine why this should the the default behaviour of GBIF. Maybe I am not aware of the overall situation, but...

Thank you for the suggestion I will try that. What is the API call you are using for gbif_downstream ?

That was a weird one. Found the problem. If the USB stick disconnects because it's a bit wobbly, it doesn't work any more. If I restart RStudio it works until...

I have the same issue. I do not have binned quality scores. https://github.com/benjjneb/dada2/issues/1343 The solution of @JacobRPrice's "Trial 1" does not work for me. ``` errF

I use this to check for tha primer at the start of my reads: ``` temp_rev_match % subseq(., start=1, end=nchar(its1_forw_primer)+1), max.mismatch = 3, fixed = F) %>% startIndex temp_rev_match 0,...

@[andressamv](https://github.com/andressamv) You don't need to worry about overhangs if you use ITSx software to cut everything except the ITS1 region.

You cound try ``` temp_forw % startIndex temp_forw_match 0 , x, NA)) %>% unlist temp_forw_match[temp_forw_match!=1]

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