Andrea Mariani issues

Results 4 issues of


                                            Andrea Mariani

Is there an equivalent of "Bowtie2 --very-sensitive" for Bowtie1 [suggested label = Question]

Hi all, great tools guys. As the title says, i was debating with some colleagues as whether there is an alternative/a close set up that one can use to replicate...

c_curve and lc_extrap output format

Hi, I'm using preseq v3.1.1 and the output format of c_curve and lc_extrap i think could be improved. Given that they are frequently used together, c_curve output column names are...

garth.UserProfile.get() and garthUserSettings.get() throw an error

Hi, Thanks for the package, really useful. I've noticed that when running `garth.UserProfile.get()` and `garth.UserSettings.get()` both throw an error during validation with pydantic. Here's the error for `UserProfile`. The same...

Output counts for multi-task BPNet models

Hi Jacob, I've got a very naive questions. When training a bpnet-lite model for 2 TFs, the output of the model is a profile tensor and a counts tensor. Let's...