AndreaGhiroldi

I've installed Salmon and made the index, but once I run the analysis, I've got this error: (salmon) andrea@Precision-7920-Tower:/hdd_a/andrea/Salmon$ sudo salmon quant -i GRCh38_salmon_index/ -l A -r /hdd_a/andrea/Salmon/Fastq/1_vehicle_R1.fastq.gz --validateMappings -o...

I'm trying to construct the reference for Salmon, but the process stopped with this error: salmon index -t CRCH38_and_decoys.fa.gz -d decoys.txt -i GRCh38_salmon_index --gencode [2024-02-19 12:14:55.227] [puff::index::jointLog] [warning] Entry with...

Problem in running Celescope for RNA

4

I've installed Celescope and run the test_script and everything worked. I've tried to run an analysis on one sample but I've got this error: (celescope) andrea@Precision-7920-Tower:/hdd_a/andrea/Celescope$ sh run.sh : not...

Problem in mkref command

2

Hi, I was following the tutorial to install Celescope, but I had an issue with the mkref command: (celescope) root@PT-DR-GHIROLDI:/home/aghiroldi/hs_ensemble_99# celescope rna mkref \ > --genome_name Homo_sapiens_ensembl_99_filtered \ > --fasta...