AnastasiaBum

KeyError('unknown reference MT') on GRCh38.d1.vd1(UCSC-style-name)

4

Hi! When running `aldy==4.8.2` on a BAM aligned to [GRCh38.d1.vd1](https://gdc.cancer.gov/about-data/gdc-data-processing/gdc-reference-files) ([UCSC-style-name](https://ftp.ncbi.nlm.nih.gov/genomes/all/annotation_releases/9606/GCF_000001405.40-RS_2024_08/GCF_000001405.40_GRCh38.p14_assembly_report.txt)), the program crashes with: ```bash Gene MT-RNR1 ERROR: gene= all, file= /inputs/xxxxxx_dnaseq-alignment_v1.5.0_bwa2.bam KeyError('unknown reference MT') Traceback (most recent call...

Differences observed in VCF files between Delly v1.5.0 and v1.7.2

4

Hello! After updating Delly from `v1.5.0` to `v1.7.2`, significant differences were observed in the VCF files generated for the same sample. The command used for both versions: ```bash delly call...