AlphaJulietAlpha

Mapping paired reads w/ giraffe, no EOF marker, job stalls, exit code 79

5

I am mapping paired end reads to HPRC-GrCH38 (indexed with vg autoindex) `vg autoindex --workflow giraffe -x grch38.xg -g grch38.gcsa -g /path/to/file/grch38/hprc-v1.0-minigraph-grch38.gfa -p GRCH38_pangenome --target-mem 80G -t 20 > grch38_pangenome.girrafe.gbz...