AllenSDK

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Add fingerprint stimulus to stim table

8

BehaviorOphysSession.stimulus_presentations should also include rows for the fingerprint_stimulus that is shown at the end of each behavior session

wbwakeman

Visual Behavior - Neuropixels July 2022 LFP data and probe missmatch

3

Hi! ### Extracting LFP data in Visual Behavior - Neuropixels July 2022 I wanted to extract LFP data from the new dataset (Visual Behavior - Neuropixels July 2022) but I...

m-abdollahi

KeyError: "'ndx-aibs-ecephys' not a namespace" when loading NWB files

3

**Describe the bug** I get the following error when I try to read NWB files (Visual Coding Neuropixels experiment) after loading them with NWBHDF5IO function of pynwb package: ``` Traceback...

dervinism

SDK updates needed to accommodate metadata frame from MVR

4

**Describe the bug** The SDK currently shows an off by 1 error for all video streams generated using the new MVR implemented by MPE. We believe this is due to...

DowntonCrabby

Remove to_json api

1

to_json API has been replaced by an external json creator, i.e `VBN2022InputJsonWriter` Remove all references to `to_json` in `DataObject` API

aamster

Instructions on http://confluence.corp.alleninstitute.org/pages/viewpage.action?pageId=75009306 before merge - [x] update version in `__init__.py` - [x] update what's new in index.rst - [x] update the CHANGELOG.md - [x] make sure github CI passes...

wbwakeman

I'm open to the idea that this is not the right place to document this. Should it go in the `BehaviorSession.to_nwb()` docstring?

danielsf

Hello all, I am touching base with you because I am currently working on some mouse data and I would like to visualize my result into a surface. I have...

Davi1990

behavior session 875471358 has incorrect stimulus and errors on loading the dataset

10

behavior_session_id = 875471358 has a few issues with it. First, the behavior_session_table says the session_type is OPHYS_6_images_A, however that session_type should not exist for VisualBehaviorMultiscope experiments because the novel image...

matchings

consistency in time columns of stimulus_presentations table

2

In the `stimulus_presentations `table of the `behavior_ophys_experiment_dataset `class (AllenSDK 2.12.12), there are columns called `start_frame`, `stop_frame `and `start_time`, `end_time`. I propose renaming `stop_frame `to `end_frame `for consistency. This would impact...

matchings