AllenSDK
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Mouse atlas in surface space
Hello all,
I am touching base with you because I am currently working on some mouse data and I would like to visualize my result into a surface. I have downloaded both the brain surface (/wholebrain.x3d) and the atlas (P56_Annotation.nii.gz) from this web site:
https://scalablebrainatlas.incf.org/mouse/ABA_v3
However, I have some difficulties to find correspondence between vertices and brain regions. Specifically in the brain surface file (/wholebrain.x3d) there are 31751 vertices, I was wondering if you have a vector file 1x31751 which specify what vertex belong to a specific parcellation value.
I was thinking if you could please help me with that
Thanks in advance for your help
Best Regards