pytorch_integrated_cell

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Extra: Fancy visualization, for both raw GFP and segmentation predictions

ritvikvasan

Extra: Implement multiple analysis using the latent vectors - for example, compare to cell features

ritvikvasan

ritvikvasan

gan -> bVAE

donovanr

Results: Figure 5

2

## Issue summary Fix up figure pretty significantly ## Details > had not appreciated that there were only 23 cells with the Golgi tag in the paclitaxel-treated group. I think...

donovanr

## Issue summary Listing PlosCompBiol submission guidelines ## Details Full guidelines: https://journals.plos.org/ploscompbiol/s/submission-guidelines ## TODO - [ ] PDF not latex for initial submission - [ ] Manuscript text should be...

tknijnen

Results: Figure 3

1

## Issue summary Fewer images / organelles / conditions ## Details > Too many sample images, way too teeny. Five columns should be enough in part B to make the...

donovanr

Results: Content related to Fig. 3

1

## Issue summary feature histograms are all messed up ## Details > There is something deeply wrong with the output in part C. Look at “cell shape area” (which I...

donovanr

Discussion: β-VAE vs GAN

1

## Issue summary discuss new model re old one(s) ## Details > There are a lot of interesting things to say about the beta-VAE as compared to the GAN used...

donovanr

## Issue summary we underplay how good the encoded / generated cells look ## Details > It is a HUGE WIN that the model is learning appropriate organelle distributions. This...

donovanr