AljenU

timelockanalysis: use parfor instead of for

1

With some small adaptations, it is possible to use a parfor loop in ft_timelockanalysis. This potentially speeds up the calculation, when the parallel computing toolbox is available. Tested with https://github.com/AljenU/fieldtrip-parallel-support/tree/additional_tests,...

With some small adaptations, it is possible to use a parfor loop in ft_networkanalysis. This potentially speeds up the calculation, when the parallel computing toolbox is available. Possibly, this could...

For jobs with status 'failed', 'inactive' or 'error', there is a difference between the situation before and after aaworkermaximumretry is reached. Before the max retry is reached, remove_from_jobqueue() is called,...

In aas_retrieve_inputs_part2, input streams are copied/hardlinked for use elsewhere (?) In the case 'local', this uses linux-specific functions, which do not work on windows. Partial solution: use matlab copyfile() instead....

ENH - Have a CI runner with Windows

2

Windows not yet supported by matlab-actions. When it becomes available, to add it, such that at least the minimal-install tests are also run on windows. Adaptations required - Put directory...

ENH - put toolbox extraparameter handling in specific classes

1

Currently, in aas_inittoolbox there is a parsing of toolbox extraparameters. This assumes that the extraparameters for different toolboxes can be handled the same, whereas this is something that is actually...

ENH - Separate the information goal from the path-setting goal in aaClass and global aa

1

Both the "global aa" and aaClass have a dual use, with very little overlap between the uses. The first use is to provide information (from the combined .json file and...

ENH - Naming and categorisation of example scripts

5

From this discussion comment https://github.com/automaticanalysis/automaticanalysis/discussions/254#discussioncomment-1510075 1. Rename the example scripts: gettingstarted,starter, or start could indicate scripts to start with as a newbie demo to demonstrate a(n advanced) functionality 2. Files...

According to the linter: "com.mathworks package and subpackages will be removed in a future release

ENH - Have a test in the CI that does use parallel computing

5

All tests are currently localsingle. If Matlab Parallel Processing toolbox is available, consider having tests that run batch and/or matlab_pct. This so we also test that those do work correctly...