Ali Soultan

Monai whole body segmentation unable to run on gpu in colab

4

Good day, Trying to run whole-body segmentation model (Model_lowers.pt) on colab gpu and getting this error: error message: NotImplementedError: Could not run 'aten::slow_conv3d_forward' with arguments from the 'CUDA' backend. device...

transformation ``` train_transforms = Compose( [ LoadImaged(keys=["image", "label"]), EnsureChannelFirstd(keys=["image", "label"]), ScaleIntensityRanged( keys=["image"], a_min=-1024.0, a_max=1906.0, b_min=0.0, b_max=1.0, clip=True, ), Spacingd(keys=["image", "label"], pixdim=(1.5, 1.5, 2.0), mode=("bilinear", "nearest")), Orientationd(keys=["image", "label"], axcodes="RAS"), Resized(keys=["image", "label"],spatial_size...

monai UNET training error , diffreneces in tensor size

1

good day, tensor size for image , label checked from train dataloader just before the training ``` data = first(train_loader) data['image'][6].shape , data['label'][6].shape (torch.Size([1, 90, 90, 40]), torch.Size([1, 90, 90,...

visualization completely stopped in vscode , jupyter notebook and jupyter lab

2

``` (pytorch01) >jupyter labextension list JupyterLab v4.4.0 C:\Users\x\anaconda3\envs\pytorch01\share\jupyter\labextensions catboost-widget v1.2.5 enabled ok imjoy-jupyterlab-extension v0.2.6 enabled ok (python, imjoy_jupyterlab_extension) jupyter-matplotlib v0.11.3 enabled ok jupyterlab-datawidgets v7.1.2 enabled ok jupyterlab-plotly v5.22.0 enabled X...