Shanshan Gu

is it suitable for the very big genome?

2

Hi, I have a big genome with 46,139,523,234 bases and 20131 contigs. Here is the summary of the longest contigs. ``` ptg000004l 169819904 ptg000441l 158822330 ptg000279l 109104046 ptg000035l 107045360 ptg000669l...

Hi, I ran orthofinder in proteome of 14 species and get 1028 single copy genes. Then, I added 1 species and run orthofinder in proteome of these 15 species. 683...

make telescope faster

2

Hi, is there a way to make telescope faster? I have a big genome (47G) and my bam file from STAR is about 27G. It seems that telescope will take...

align one genome to another fragmented genome

11

Hi, I have two huge genomes (ref: 48G; query: 20G). To obtain an accurate genome alignment, I tried to annotate the transposable element (TE) and filter the non-TE sequence longer...