Alina Kurjan

RealTimeKernel.from_moscot(tp) Out of Memory

27

Hi, thank you very much for Moscot and Cellrank resources! I was wondering if you could please advise the best way to get around the "XlaRuntimeError: RESOURCE_EXHAUSTED: Out of memory...

Help with Analysis for Multiple samples, Counts normalization?

1

Hi, I have questions about how to carry out pySCENIC analysis correctly using data from more than a single sample. For example, I am working with data from 3 biological...

**Should normalized counts be scaled before running PCA?** I was just looking through the dimensionality reduction section and noticed that you use the log1p_norm counts for the PCA. Is there...

Batch-aware highly deviant gene selection

3

Hi all, thank you for developing this fantastic resource. I was wondering if you had any advice on how to implement highly deviant gene selection in a batch-aware manner, similar...