Alicia Schep

@dasiav7 This package does not rely on the plotly R package, only on the JS package, so using a function from the R package won't work. Potentially this package could...

Thanks @jonmmease, will try it out

Seems like the handling of NAs for these functions needs to be examined and maybe adjusted. What is the behavior you would expect for giving all NA values?

Hi Marcel, I think this would be a great additional feature. I have been thinking that it would be good to have the possibility of a discrete colorscale when you...

Yes, if you are referring to `differentialVariability` that is! That would be a good thing to add to the docs.

How many cells? What input options? Seems like an issue with `cor` function being able to handle the data size. Wonder if there are implementations of cor that scale better.

I suspect this has to do with how the chromosome are encoded, that they are '1' '2' etc but then it is getting an unexpected type when it reads 'X'....

It looks like your file is narrowPeak format? Have you tried `readNarrowpeaks` ? (still might need the chromosome change to have 'chr', that is a bug #37 )

Hi @znavidi it looks like the dataset that you can download from GSE99172 has column names where the columns refer to the GEO accession for the previous data or are...

Also https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE74310 provides a data set where the celltype is included in the column name if that is helpful