Alicia Schep

1) Identical deviations there does seem weird. Can you share how/when you changed the peak width? In terms of the warning, it is just a warning and not an error,...

Hi @NicolasRichard44 the package was written before the 10x method was released or 10x-scale data was available. I think some people have used it to analyze 10x data (see #44...

Thanks for the pull request! Did not see it earlier... will take a look but I suspect it will be a good addition!

Thanks for the updates @ayeaton. Two things I'm trying to understand: (1) What the function will do with multiple different bed files as input, either with some of the same...

Thanks for clarification re the multiple files (and new test case!). I will take a closer look at the matrix creation to see if I have a more concrete suggestion...

@eliduong Thanks for bringing up this issue. Could you share what `head(rownames(dev))` and what `head(rowData(dev))` return?

Hi @eliduong, thanks for info, it was helpful and I think I figured out the source of the error... I will fix bug and will update here when the fix...

Okay I think this bug should be fixed now; can you try re-installing (from Github) and seeing if it works?

hmm okay. same exact error message?

@eliduong Would you be able to share the stack traceback? e.g. from calling `traceback()` after getting the error?