AlexanderAivazidis

icon company Sanger Institute icon location Cambridge icon location PhD student at Sanger Institute/Cambridge University. Working on topics in Genetics, Spatial Transcriptomics and Neuroscience.

Results 5 issues of AlexanderAivazidis

RelaxedBernoulliStraightThrough seems to give continuous samples when used in conjunction AutoHierarchicalNormalMessenger/AutoNormalMessenger

15 comment

Hi, I have used the RelaxedBernoulliStraightThrough distribution in my model in a code block like this: ``` with obs_plate: I_cm = pyro.sample('I_cm', RelaxedBernoulliStraightThrough(probs = p_m, temperature = self.one/1000. ).expand([batch_size, 1,...

bug

cellDancer does not use GPU

1 comment

Hi! I just saw that cellDancer is not using the GPU on my system (by running the nvidia-smi command). Is that expected? If not is there anything I can try...

feat(train_model): add atac layer argument

6 comment

enhancement
python

feat(models): add k-NN model

enhancement
python

ValueError: unsupported pickle protocol: 5

Hi, I am getting the following error when I run CellDancer with more than 1 job. I made sure there is enough memory available, so I don't think that can...