Hang (Alex) Song
Hang (Alex) Song
Yes it is automatically terminated by the cluster when it reaches the wall time. Yes, I will try that! Thanks a lot!
I have enough memory in the storage account. Which I have 3 TB storage. But when I download it, it showed broken pipe. Then I changed to a slurm scripts....
Yes, below is my full log. Thank you @milot-mirdita ! > easy-predict contigs_includingBioFilterEffluent.EUK_KmerMajority_min3000bp_CAT_min1000bp.fasta /nfs/turbo/cee-raskin/hangsong/metaeuk_db/MMETSP_uniclust50_MERC_profiles MetaEuk_results/predRedRedund_prot.fasta tmp --metaeuk-eval 0.0001 -e 100 --exhaustive-search 1 --min-ungapped-score 35 --min-length 40 --threads 16 --split-memory-limit 300G...
> ...I'll join this thread, since I came across exactly this problem today :). I fear it might be about the db size. A smaler db worked without problems for...
@Tamtatatam Thank you for your reply！ How big are your subsets of NR? I used the protein profile from this link (https://wwwuser.gwdg.de/~compbiol/metaeuk/2019_11/), and it is 295 G. How did you...
> This is not supposed to happen. Can you downgrade to the previous metaeuk version, while we investigate whats going on? The previous one should work correctly with the profile...
@milot-mirdita The previous version works! Thanks for the help!