Alex Nesta

Please add an option to express min overlap as a percentage. This is done in other tools like bedtools. See -f and -F: ``` -f | Minimum overlap required as...

In your R script (create_regions_from_gencode.R) there is a small bug

5

``` transcripts.data

Feature Request: Variable boundaries like SUPPA

5

I've seen a few issues posted here that describe lots of alternative first and alternative last events. These could simply be due to a noisy reference gtf. SUPPA makes it...

ORQAS fails at Ribomap step

7

I have tried running both the run_ORQAS.sh script and running the pipeline step by step. I have tried using my ownrnaseq and riboseq data and the sample data. I keep...

Make readme.md display properly

1

Hey, I just added some spaces after each line in your markdown so that it will display properly and the instructions are more easily understood. Thanks for hosting & maintaining...