AlePur

icon company Stockholm University icon location Stockholm icon location Bioinformatics and some web development

Results 3 issues of AlePur

DensMAP support

2 comment

I added an optional boolean parameter to scanpy.tl.umap for DensMAP. Since umap 0.5, ``simplicial_set_embedding`` takes ``densmap`` and ``densmap_kwds`` parameters, and tools/_umap is using this function, so DensMAP support is easily...

sc.pl.paga_path error in dimensions of array passed to ax.imshow

### Please make sure these conditions are met - [X] I have checked that this issue has not already been reported. - [X] I have confirmed this bug exists on...

Bug 🐛

MaskedTorch _check_parameter edge case leads to torch error

**Describe the bug** In _utils.py, `_check_parameter` has this min_value check. However, when I pass a fully masked MaskedTensor, the if condition (`if (parameter < min_value).sum() > 0`) within the `_check_parameter`...