Jonatan Gonzalez Rodriguez

Hello @tjiangHIT Yes I am aware the VCF POS is 1-based, but I still had some doubts since cuteSV generates signatures on BED format and that is 0-based for the...

Hello @Meltpinkg I think there may be some problems on incongruences on how the start and end positions are computed.  On this image I attached you can see how...

Hello, Yes, the command I use for both samples is the same `cuteSV -t 50 -S CUTESV_Normal -s 2 -L -1 -md 5 --genotype --max_cluster_bias_INS 1000 --diff_ratio_merging_INS 0.9 --max_cluster_bias_DEL 1000...

Hello @Meltpinkg, Is there any update on this? Did you have time to check it? Best regards, Jonatan

Hello @Meltpinkg Thanks for the reply. I see you fixed the problem that there was with the detection of this deletion in the control sample. It is true that 1bp...

Hello @Meltpinkg, I just re-checked and the problematic one I commented on the issue seems to have been fixed. But in the BAM file I sent you for both the...

Hello @tjiangHIT, I understand this *max_cluster_bias_INS* distance is measured in bp? If that is the case there are no other insertions in a range of 100bp from the one shown....

Hello @tjiangHIT, Here it's attached the subset you asked for. [INS_subset.txt](https://github.com/tjiangHIT/cuteSV/files/6746678/INS_subset.txt) Regarding the reference allele, I'm still not sure I understand it since if I'm not wrong the **breakpoint-1** is...

Hello @tjiangHIT, Thanks for the quick replies and always taking the time to explain everything in a clear way. Your message actually helped to understand why the reference allele in...

Hello @tjiangHIT, Reading your answers I reach the conclusion that although you can see in the screenshots multiple insertions that are in the same position, this is not the position...