Nir Shahaf

It seems I have a similar problem with an imported/committed images. They either would not start, with this message: _"could not connect to server: Cannot assign requested address Is the...

Referring to: https://github.com/sneumann/xcms/issues/437 The following command already triggers this error. 'rd_pools' in this case is an "OnDiskMSnExp" object linked to four experimental files: `xd_pools = findChromPeaks (rd_pools,cwp,BPPARAM = bpparam$MulticoreParam)` |...

Hi, Thanks both for your replies. 1) running with `SnowParam` did not work either and resulted in the following error: _Error in serialize(data, node$con) : ignoring SIGPIPE signal Calls: local...

Hi back, Sorry for the pause. Following the info which Steffen sent, the sys. admin has limited this instance's use of resources to 80% and this has already made the...

Hi Chris, referring to "tuning" Sirius to DIA data I would look at two parameters: a) the MS2 mass measurement accuracy which should reflect your instrument's performance; b) the isotopic...

Hi Niek, Thanks a lot for updating. The model indeed seems to be able to handle mixed-mode data, to a certain extent (more on that in another thread). I do...

Hi, I want to add that since this issue was opened a couple of months ago the tutorial / procedure to train MS2DeepScore 2.0 doesn't seem to have been updated...

> Ah yes, you are right, that is missing. Below the code to create embedding/vector representations. > > ```python > model = load_model(model_file_name) > ms2ds_model = MS2DeepScore(model) > ms2ds_embeddings =...