ygc

The Umap map is out of order

1

Hi Zhang， Nice work! I'm having a problem with out-of-order images. But my filelist is in the same order as the cell types in the label_info.pickle file. I would like...

pybedtools.bedtool.Bedtool.sort()

1

Hi, First of all - thank you for your amazing work. pybedtools has been super useful for my research so far and I am very grateful. I have a problem...

call TADs

1

Hi Ruochi, Nice work! Now I impute a scHi-C data and generate corresponding cool files. I want to use Higashi to call TADs to generate the number and fraction of...

impute some of these cells with the trained model

1

Hi Ruochi, Nice work! When I use Higashi to impute the data with 10K resolution, the program always breaks due to memory limitations. So can I impute some of the...

Hi Ruochi, Nice work! When using Higashi to call domains, the results in the calib_tads group of the output.h5py file are either 0 or 1, where 1 indicates that the...