Aaron Pfennig

icon indicating a website link https://www.linkedin.com/in/aaronpfennig/

icon company Princeton University icon location Princeton icon location Postdoc in the Akey Lab

Results 3 issues of Aaron Pfennig

vcfanno doesn't annotate sites that are polymorphic in query vcf but fixed for reference allele in annotation vcf

2 comment

Hi Brent, I was trying to annotate 1KGP VCFs with genotype information of archaic hominins (e.g., Altai Neanderthal). These individuals have a lot of sites that are homozygous for the...

pandas.errors.EmptyDataError: No columns to parse from file

16 comment

Hi, Thanks for the great work. I experience a similar issue as described here #28 and here #34. ``` longQC:2021-10-27 08:06:14,443:598:INFO:Generating coverage related plots... Traceback (most recent call last): File...

bug

Inconsistent alignments depending on whether reference file is gzipped or not

7 comment

Hi, I am using mashmap v3.1.3 and I noticed that the same alignment was reported multiple times in the output file. For example, here is the output for reference chromosome...