Aarhus-kga

Using Telomere-to-Telomere as reference

2

For my analysis I wish to use the [Telomere-to-Telomere](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_009914755.1/) human reference genome of which there are two assemblies; RefSeq assembly (GCF_009914755.1) and GenBank assembly (GCA_009914755.4). I've aligned my data to...

Dmr pair segment misses clearly differentially methylated region

2

I have a sample in which I know there is a hypomethylated region (chr11:2698767-2700902) in the KCNQ1OT1 gene. In IGV I can clearly see the difference in methylation between this...